Genomic analysis shows a tight link between transcription factor dynamics and regulatory network architecture

نویسندگان

  • Raja Jothi
  • S Balaji
  • Arthur Wuster
  • Joshua A Grochow
  • Jörg Gsponer
  • Teresa M Przytycka
  • Madan Babu
چکیده

1 Biostatistics Branch, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, USA, 2 National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MA, USA, 3 MRC Laboratory of Molecular Biology, Cambridge, UK and 4 Department of Computer Science, University of Chicago, Chicago, IL, USA 5 These authors contributed equally to this work * Corresponding authors. R Jothi or MM Babu, Biostatistics Branch, National Institute of Environmental Health Sciences, National Institutes of Health, 111 TW Alexander Drive, MD A3-03, Research Triangle Park, NC 27709, USA. Tel.:þ 1 919 316 4557; Fax:þ 1 301 541 4311; E-mails: [email protected] or [email protected] 6 Present address: Center for Cancer Systems Biology and Department of Cancer Biology, Dana-Farber Cancer Institute, and Department of Genetics, Harvard Medical School, Boston, MA 02115, USA

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture

Although several studies have provided important insights into the general principles of biological networks, the link between network organization and the genome-scale dynamics of the underlying entities (genes, mRNAs, and proteins) and its role in systems behavior remain unclear. Here we show that transcription factor (TF) dynamics and regulatory network organization are tightly linked. By cl...

متن کامل

I-13: Transcriptome Dynamics of Human and Mouse Preimplantation Embryos Revealed by Single Cell RNA-Sequencing

Background: Mammalian preimplantation development is a complex process involving dramatic changes in the transcriptional architecture. However, it is still unclear about the crucial transcriptional network and key hub genes that regulate the proceeding of preimplantation embryos. Materials and Methods: Through single-cell RNAsequencing (RNA-seq) of both human and mouse preimplantation embryos, ...

متن کامل

Molecular Study of Vascular Endothelial Growth Factor Gene in Iranian Patients after Myocardial Infarction

Background: Stimulation of collateral artery growth (arteriogenesis) and/or capillary network growth (angiogenesis) would be beneficial to the patients with myocardial infarction. To understand the central role of vascular endothelial growth factor (VEGF) in biological angiogenesis, we performed molecular analysis of the VEGF gene in patients afflicted with acute myocardial infarction (AMI). Me...

متن کامل

Dynamical Analysis of Yeast Cell Cycle Using a Stochastic Markov Model

Introduction: The cell cycle network is responsible of control, growth and proliferation of cells. The relationship between the cell cycle network and cancer emergence, and the complex reciprocal interactions between genes/proteins calls for computational models to analyze this regulatory network. Ample experimental data confirm the existence of random behaviors in the interactions between gene...

متن کامل

Dynamical Analysis of Yeast Cell Cycle Using a Stochastic Markov Model

Introduction: The cell cycle network is responsible of control, growth and proliferation of cells. The relationship between the cell cycle network and cancer emergence, and the complex reciprocal interactions between genes/proteins calls for computational models to analyze this regulatory network. Ample experimental data confirm the existence of random behaviors in the interactions between gene...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2009